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MODEMIC Research team
Modelling and Optimisation of the Dynamics of Ecosystems with MICro-organisme
- Leader : Alain Rapaport
- Type : Project team
- Research center(s) : Sophia
- Field : Computational Sciences for Biology, Medicine and the Environment
- Theme : Observation, Modeling, and Control for Life Sciences
- INRA, Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (UMR)
Team presentation
The research activities of MODEMIC focus on modelling and simulating of natural or reconstituted microbial ecosystems, over several time and space scales, as well as various diversity levels. The main objectives of the project are:- a better understanding of microbial ecology, especially its functions (degradation, fermentation, sequestration...), its biodiversity and its role in preserving the environment (quality of water resources, soil fertility...)
- new decision-making tools for managing and improving bioprocesses (decontamination, green chemistry...)
Research themes
- macroscopic approach
- microscopic approach
- marriage of both approaches
- assessment of community structures
- characterization of the interactions
- observation of spatial structures
- identification, software sensors and filtering
- bioprocess stabilization
- optimal control of bioreactors
- plant design and optimization
International and industrial relations
- UMR Centro de Modelamiento Matematico, Santiago, Chile
- Departamento de Ingeniera Matematica, Universidad de Chile, Santiago, Chile
- Departamento de Matematica, Universidad Tecnica Federico Santa Maria, Valparaiso, Chile
- Departamento de Ingenieria Informatica, Universidad de Santiago, Chile
- Instituto de Matematica y Ciencias Afines, Universidad Nacional de Ingenieria - Lima, Peru
- Centre for systems engineering and applied mechanics, Université catholique de Louvain-la-Neuve, Belgium
- Automatic Control Laboratory, Université de Mons, Belgium
- Departamento de Matematica Aplicada, University Complutense of Madrid, Spain
- NRC Biotechnology Research Institute, Montréal, Canada
- Probability and Statistics Group, School of Mathematics, University of Manchester, United Kingdom
- Community and Conservation Ecology group, University of Groningen, Netherland
- Department of Biology, McGill University, Montréal, Canada
- School of Biology, Georgia Institute of Technology, Atlanta, USA
- Laboratoire de Modélisation Mathématique et Numérique dans les Sciences de l'Ingénieur, Ecole Nationale d'Ingénieurs de Tunis, Université Tunis El-Manar, Tunisia
- Laboratoire d'Automatique, Université de Tlemcen, Algeria
- Laboratorio di Ingegneria Ambientale, Politecnico de Milano, Italy
- Centre de Biotechnologie de Sfax, Tunisia
- Grupo de Ingenieria Ambiental y Bioprocesos, Universidade de Santiago de Compostela, Spain
- Escuela de Ingenieria Bioquimica, Pontifica Universidad Catholica de Valparaiso, Chile
- BANG - Nonlinear Analysis for Biology and Geophysical flows
- BIGS - Biology, genetics and statistics
- BIOCORE - Biological control of artificial ecosystems
- CARMEN - Modélisation et calculs pour l'électrophysiologie cardiaque
- DRACULA - Multi-scale modelling of cell dynamics : application to hematopoiesis
- MACS - Modeling, analysis and control in computational structural dynamics
- MASAIE - Tools and models of nonlinear control theory for epidemiology and immunology
- NUMED - Numerical Medicine
- REO - Numerical simulation of biological flows
- SISYPHE - SIgnals and SYstems in PHysiology & Engineering
- VIRTUAL PLANTS - Modeling plant morphogenesis at different scales, from genes to phenotype
Keywords: Modelling Microbial ecology Environment preservation Biodiversity Dynamical systems Optimisation Individual-based models Spatio-temporal dynamics Multi-scale Numerical simulations
Research teams of the same theme :
Contact
Team leader
Alain Rapaport
(See all teams)
Tel.: +33 4 99 61 26 52
Secretariat
Tel.: +33 4 92 38 75 56
Find out more
Genealogy
This team follows
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See also